PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.02G124300.1.p
Common NameGLYMA_02G124300, LOC100781670
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 314aa    MW: 35306.4 Da    PI: 6.037
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.02G124300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.72.7e-181461148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+WT+eEd++l+d ++++G  +W++ ++  g++R++k+c++rw +yl
  Glyma.02G124300.1.p 14 KGPWTPEEDQKLIDHIQKHGHASWRALPKLAGLNRCGKSCRLRWTNYL 61
                         79********************************************97 PP

2Myb_DNA-binding57.92.4e-1867112148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          rg++++eE++ ++d+++ lG++ W++Ia++++ gRt++++k++w+++l
  Glyma.02G124300.1.p  67 RGKFSQEEEQTILDLHAILGNK-WSAIASHLP-GRTDNEIKNFWNTHL 112
                          89********************.*********.************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.0E-25564IPR009057Homeodomain-like
PROSITE profilePS5129417.168961IPR017930Myb domain
SuperFamilySSF466891.8E-3111108IPR009057Homeodomain-like
SMARTSM007176.1E-151363IPR001005SANT/Myb domain
PfamPF002495.7E-171461IPR001005SANT/Myb domain
CDDcd001671.17E-111661No hitNo description
PROSITE profilePS5129427.11362116IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.9E-2865117IPR009057Homeodomain-like
SMARTSM007171.7E-1766114IPR001005SANT/Myb domain
PfamPF002496.7E-1767112IPR001005SANT/Myb domain
CDDcd001679.97E-1369112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MGRSPCCDEI GLKKGPWTPE EDQKLIDHIQ KHGHASWRAL PKLAGLNRCG KSCRLRWTNY  60
LRPDIKRGKF SQEEEQTILD LHAILGNKWS AIASHLPGRT DNEIKNFWNT HLKKKLIQMG  120
YDPMTHQPRI DDIFTGLSHL IALANLKELL DQPLEQNLAR LQELAKLQCL QQHLLQPQAS  180
LNIDADPNYT INSTINSTFM MNKGTINVSN DQFENIIMSS NCTMPFSDMP ELKTPPSCSY  240
EAPLSNKDMI QLSQGEIYPD SPWLLSCSST TPSSPSSLVA PPVTEVSLST NVEDNCTIWP  300
ELLLEDPLFK MIS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-30121165108B-MYB
1h8a_C2e-301211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150432e-69AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003520138.10.0PREDICTED: transcription factor MYB39-like
SwissprotQ8GWP04e-74MYB39_ARATH; Transcription factor MYB39
TrEMBLA0A0B2RDH70.0A0A0B2RDH7_GLYSO; Transcription factor MYB39-like protein
TrEMBLI1JEL40.0I1JEL4_SOYBN; Uncharacterized protein
STRINGGLYMA02G13770.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40234172
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34670.13e-93myb domain protein 93